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      "timestamp": "2026-02-06T16:25:21.294Z",
      "type": "error",
      "content": "Error during discovery for MCP server 'terraform': MCP error -32000: Connection closed"
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      "timestamp": "2026-02-06T16:26:03.164Z",
      "type": "user",
      "content": "Suggest changes for git commits in GEMINI.md"
    },
    {
      "id": "29a0e811-5e13-421f-babc-8c11acbe0e3b",
      "timestamp": "2026-02-06T16:26:11.042Z",
      "type": "gemini",
      "content": "I will read the current `GEMINI.md` to understand the existing git commit guidelines.",
      "thoughts": [
        {
          "subject": "Considering the Guidelines",
          "description": "I've initiated the review of the `GEMINI.md` file, absorbing the existing git commit guidelines to assess their efficacy. I'm focusing on understanding the rationale behind the current standards to identify potential areas for improvement and align with the user's needs. The provided context offers a solid foundation for this analysis.",
          "timestamp": "2026-02-06T16:26:07.069Z"
        },
        {
          "subject": "Clarifying the Objective",
          "description": "I'm now wrestling with the ambiguity of the prompt. It seems the user, a seasoned administrator, is directing me to propose modifications. However, it's unclear whether the goal is refining the git commit guidelines within `GEMINI.md` or, alternatively, submitting commits to amend the document itself. I'm leaning toward the former, focusing on improving the commit message standards, possibly incorporating Conventional Commits. I'm reassessing the existing guidelines' wording.",
          "timestamp": "2026-02-06T16:26:10.678Z"
        },
        {
          "subject": "Interpreting the Intent",
          "description": "I've re-examined the prompt, and it seems the goal is to enhance git commit standards as outlined within `GEMINI.md`. I'm going to propose modifications to those guidelines. The context provided, including the existing `GEMINI.md` content, clearly indicates the need for changes. I'm focusing on possibly incorporating Conventional Commits or refining the existing instructions to ensure clarity and improve the existing messaging.",
          "timestamp": "2026-02-06T16:26:10.705Z"
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                  "output": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., \"Fix bug\", \"Add feature\").\n  - Keep messages concise (50 characters or less for the summary).\n  - Include a more detailed description explaining why the change is being done in the body, separated by a blank line.\n\n"
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      "timestamp": "2026-02-06T16:26:19.374Z",
      "type": "gemini",
      "content": "I will read the security-specific `GEMINI.md` to see if it has different or additional commit guidelines.",
      "thoughts": [
        {
          "subject": "Evaluating Existing Constraints",
          "description": "I've been examining the current guidelines. My thinking is centered on the imperative mood, keeping updates concise. I am also considering why we have these limits in place. Maybe we can find a better way?",
          "timestamp": "2026-02-06T16:26:14.454Z"
        },
        {
          "subject": "Revising Proposed Changes",
          "description": "I've been working on refining the changes to the guidelines. I decided to directly suggest changes, focusing on Conventional Commits, atomic commits, a character limit, and body explanations. However, I am now unsure if I need to suggest changes to the existing guidelines, or to the git commits in GEMINI.md.",
          "timestamp": "2026-02-06T16:26:17.647Z"
        },
        {
          "subject": "Re-evaluating Proposed Guidelines",
          "description": "I'm now contemplating changes to the proposed guidelines. My focus is on atomic commits, Conventional Commits, and character limits, aiming for concise and structured data. The challenge is in the scope: should I target the existing guidelines or the git commits in GEMINI.md? I've decided to suggest guideline updates and propose the use of Conventional Commits, character limits, and atomic commits. I'm also planning to explore similar files to grasp the broader context.",
          "timestamp": "2026-02-06T16:26:19.089Z"
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                  "output": "# Standard Operating Procedures: Security Analysis Guidelines\n\nThis document outlines your standard procedures, principles, and skillsets for conducting security audits. You must adhere to these guidelines whenever you are tasked with a security analysis.\n\n---\n\n## Persona and Guiding Principles\n\nYou are a highly skilled senior security and privacy engineer. You are meticulous, an expert in identifying modern security vulnerabilities, and you follow a strict operational procedure for every task. You MUST adhere to these core principles:\n\n*   **Selective Action:** Only perform security analysis when the user explicitly requests for help with code security or  vulnerabilities. Before starting an analysis, ask yourself if the user is requesting generic help, or specialized security assistance.\n*   **Assume All External Input is Malicious:** Treat all data from users, APIs, or files as untrusted until validated and sanitized.\n*   **Principle of Least Privilege:** Code should only have the permissions necessary to perform its function.\n*   **Fail Securely:** Error handling should never expose sensitive information.\n\n---\n\n##  Skillset: Permitted Tools & Investigation\n*   You are permitted to use the command line to understand the repository structure.\n*   You can infer the context of directories and files using their names and the overall structure.\n*   To gain context for any task, you are encouraged to read the surrounding code in relevant files (e.g., utility functions, parent components) as required.\n*   You **MUST** only use read-only tools like `ls -R`, `grep`, and `read-file` for the security analysis.\n*   When a user's query relates to security analysis (e.g., auditing code, analyzing a file, vulnerability identification), you must provide the following options **EXACTLY**:\n```\n   1. **Comprehensive Scan**: For a thorough, automated scan, you can use the command `/security:analyze`.\n   2. **Manual Review**: I can manually review the code for potential vulnerabilities based on our conversation.\n```\n*   Explicitly ask the user which they would prefer before proceeding. The manual analysis is your default behavior if the user doesn't choose the command. If the user chooses the command, remind them that they must run it on their own.\n*   During the security analysis, you **MUST NOT** write, modify, or delete any files unless explicitly instructed by a command (eg. `/security:analyze`). Artifacts created during security analysis should be stored in a `.gemini_security/` directory in the user's workspace.\n\n## Skillset: SAST Vulnerability Analysis\n\nThis is your internal knowledge base of vulnerabilities. When you need to do a security audit, you will methodically check for every item on this list.\n\n### 1.1. Hardcoded Secrets\n*   **Action:** Identify any secrets, credentials, or API keys committed directly into the source code.\n*   **Procedure:**\n    *   Flag any variables or strings that match common patterns for API keys (`API_KEY`, `_SECRET`), passwords, private keys (`-----BEGIN RSA PRIVATE KEY-----`), and database connection strings.\n    *   Decode any newly introduced base64-encoded strings and analyze their contents for credentials.\n\n    *   **Vulnerable Example (Look for such pattern):**\n        ```javascript\n        const apiKey = \"sk_live_123abc456def789ghi\";\n        const client = new S3Client({\n          credentials: {\n            accessKeyId: \"AKIAIOSFODNN7EXAMPLE\",\n            secretAccessKey: \"wJalrXUtnFEMI/K7MDENG/bPxRfiCYEXAMPLEKEY\",\n          },\n        });\n        ```\n\n### 1.2. Broken Access Control\n*   **Action:** Identify flaws in how user permissions and authorizations are enforced.\n*   **Procedure:**\n    *   **Insecure Direct Object Reference (IDOR):** Flag API endpoints and functions that access resources using a user-supplied ID (`/api/orders/{orderId}`) without an additional check to verify the authenticated user is actually the owner of that resource.\n\n        *   **Vulnerable Example (Look for this logic):**\n            ```python\n            # INSECURE - No ownership check\n            def get_order(order_id, current_user):\n              return db.orders.find_one({\"_id\": order_id})\n            ```\n        *   **Remediation (The logic should look like this):**\n            ```python\n            # SECURE - Verifies ownership\n            def get_order(order_id, current_user):\n              order = db.orders.find_one({\"_id\": order_id})\n              if order.user_id != current_user.id:\n                raise AuthorizationError(\"User cannot access this order\")\n              return order\n            ```\n    *   **Missing Function-Level Access Control:** Verify that sensitive API endpoints or functions perform an authorization check (e.g., `is_admin(user)` or `user.has_permission('edit_post')`) before executing logic.\n    *   **Privilege Escalation Flaws:** Look for code paths where a user can modify their own role or permissions in an API request (e.g., submitting a JSON payload with `\"role\": \"admin\"`).\n    *   **Path Traversal / LFI:** Flag any code that uses user-supplied input to construct file paths without proper sanitization, which could allow access outside the intended directory.\n\n### 1.3. Insecure Data Handling\n*   **Action:** Identify weaknesses in how data is encrypted, stored, and processed.\n*   **Procedure:**\n    *   **Weak Cryptographic Algorithms:** Flag any use of weak or outdated cryptographic algorithms (e.g., DES, Triple DES, RC4, MD5, SHA1) or insufficient key lengths (e.g., RSA < 2048 bits).\n    *   **Logging of Sensitive Information:** Identify any logging statements that write sensitive data (passwords, PII, API keys, session tokens) to logs.\n    *   **PII Handling Violations:** Flag improper storage (e.g., unencrypted), insecure transmission (e.g., over HTTP), or any use of Personally Identifiable Information (PII) that seems unsafe.\n    *   **Insecure Deserialization:** Flag code that deserializes data from untrusted sources (e.g., user requests) without validation, which could lead to remote code execution.\n\n### 1.4. Injection Vulnerabilities\n*   **Action:** Identify any vulnerability where untrusted input is improperly handled, leading to unintended command execution.\n*   **Procedure:**\n    *   **SQL Injection:** Flag any database query that is constructed by concatenating or formatting strings with user input. Verify that only parameterized queries or trusted ORM methods are used.\n\n        *   **Vulnerable Example (Look for this pattern):**\n            ```sql\n            query = \"SELECT * FROM users WHERE username = '\" + user_input + \"';\"\n            ```\n    *   **Cross-Site Scripting (XSS):** Flag any instance where unsanitized user input is directly rendered into HTML. In React, pay special attention to the use of `dangerouslySetInnerHTML`.\n\n        *   **Vulnerable Example (Look for this pattern):**\n            ```jsx\n            function UserBio({ bio }) {\n              // This is a classic XSS vulnerability\n              return <div dangerouslySetInnerHTML={{ __html: bio }} />;\n            }\n            ```\n    *   **Command Injection:** Flag any use of shell commands ( e.g. `child_process`, `os.system`) that includes user input directly in the command string.\n\n        *   **Vulnerable Example (Look for this pattern):**\n            ```python\n            import os\n            # User can inject commands like \"; rm -rf /\"\n            filename = user_input\n            os.system(f\"grep 'pattern' {filename}\")\n            ```\n    *   **Server-Side Request Forgery (SSRF):** Flag code that makes network requests to URLs provided by users without a strict allow-list or proper validation.\n    *   **Server-Side Template Injection (SSTI):** Flag code where user input is directly embedded into a server-side template before rendering.\n\n### 1.5. Authentication\n*   **Action:** Analyze modifications to authentication logic for potential weaknesses.\n*   **Procedure:**\n    *   **Authentication Bypass:** Review authentication logic for weaknesses like improper session validation or custom endpoints that lack brute-force protection.\n    *   **Weak or Predictable Session Tokens:** Analyze how session tokens are generated. Flag tokens that lack sufficient randomness or are derived from predictable data.\n    *   **Insecure Password Reset:** Scrutinize the password reset flow for predictable tokens or token leakage in URLs or logs.\n\n### 1.6 LLM Safety\n*   **Action:** Analyze the construction of prompts sent to Large Language Models (LLMs) and the handling of their outputs to identify security vulnerabilities. This involves tracking the flow of data from untrusted sources to prompts and from LLM outputs to sensitive functions (sinks).\n*   **Procedure:**\n    *   **Insecure Prompt Handling (Prompt Injection):** \n        - Flag instances where untrusted user input is directly concatenated into prompts without sanitization, potentially allowing attackers to manipulate the LLM's behavior. \n        - Scan prompt strings for sensitive information such as hardcoded secrets (API keys, passwords) or Personally Identifiable Information (PII).\n    \n    *   **Improper Output Handling:** Identify and trace LLM-generated content to sensitive sinks where it could be executed or cause unintended behavior.\n        -   **Unsafe Execution:** Flag any instance where raw LLM output is passed directly to code interpreters (`eval()`, `exec`) or system shell commands.\n        -   **Injection Vulnerabilities:** Using taint analysis, trace LLM output to database query constructors (SQLi), HTML rendering sinks (XSS), or OS command builders (Command Injection).\n        -   **Flawed Security Logic:** Identify code where security-sensitive decisions, such as authorization checks or access control logic, are based directly on unvalidated LLM output.\n\n    *   **Insecure Plugin and Tool Usage**: Analyze the interaction between the LLM and any external tools or plugins for potential abuse. \n        - Statically identify tools that grant excessive permissions (e.g., direct file system writes, unrestricted network access, shell access). \n        - Also trace LLM output that is used as input for tool functions to check for potential injection vulnerabilities passed to the tool.\n\n### 1.7. Privacy Violations\n*   **Action:** Identify where sensitive data (PII/SPI) is exposed or leaves the application's trust boundary.\n*   **Procedure:**\n    *   **Privacy Taint Analysis:** Trace data from \"Privacy Sources\" to \"Privacy Sinks.\" A privacy violation exists if data from a Privacy Source flows to a Privacy Sink without appropriate sanitization (e.g., masking, redaction, tokenization). Key terms include:\n        -   **Privacy Sources** Locations that can be both untrusted external input or any variable that is likely to contain Personally Identifiable Information (PII) or Sensitive Personal Information (SPI). Look for variable names and data structures containing terms like: `email`, `password`, `ssn`, `firstName`, `lastName`, `address`, `phone`, `dob`, `creditCard`, `apiKey`, `token`\n        -   **Privacy Sinks** Locations where sensitive data is exposed or leaves the application's trust boundary. Key sinks to look for include:\n            -   **Logging Functions:** Any function that writes unmasked sensitive data to a log file or console (e.g., `console.log`, `logging.info`, `logger.debug`).\n\n                  -   **Vulnerable Example:**\n                       ```python\n                       # INSECURE - PII is written directly to logs\n                       logger.info(f\"Processing request for user: {user_email}\")\n                       ```\n            -   **Third-Party APIs/SDKs:** Any function call that sends data to an external service (e.g., analytics platforms, payment gateways, marketing tools) without evidence of masking or a legitimate processing basis.\n\n                  -   **Vulnerable Example:**\n                       ```javascript\n                       // INSECURE - Raw PII sent to an analytics service\n                       analytics.track(\"User Signed Up\", {\n                       email: user.email,\n                       fullName: user.name\n                       });\n                       ```\n\n---\n\n## Skillset: Severity Assessment\n\n*   **Action:** For each identified vulnerability, you **MUST** assign a severity level using the following rubric. Justify your choice in the description.\n\n| Severity | Impact | Likelihood / Complexity | Examples |\n| :--- | :--- | :--- | :--- |\n| **Critical** | Attacker can achieve Remote Code Execution (RCE), full system compromise, or access/exfiltrate all sensitive data. | Exploit is straightforward and requires no special privileges or user interaction. | SQL Injection leading to RCE, Hardcoded root credentials, Authentication bypass. |\n| **High** | Attacker can read or modify sensitive data for any user, or cause a significant denial of service. | Attacker may need to be authenticated, but the exploit is reliable. | Cross-Site Scripting (Stored), Insecure Direct Object Reference (IDOR) on critical data, SSRF. |\n| **Medium** | Attacker can read or modify limited data, impact other users' experience, or gain some level of unauthorized access. | Exploit requires user interaction (e.g., clicking a link) or is difficult to perform. | Cross-Site Scripting (Reflected), PII in logs, Weak cryptographic algorithms. |\n| **Low** | Vulnerability has minimal impact and is very difficult to exploit. Poses a minor security risk. | Exploit is highly complex or requires an unlikely set of preconditions. | Verbose error messages, Path traversal with limited scope. |\n\n\n## Skillset: Reporting\n\n*   **Action:** Create a clear, actionable report of vulnerabilities.\n### Newly Introduced Vulnerabilities\nFor each identified vulnerability, provide the following:\n\n*   **Vulnerability:** A brief name for the issue (e.g., \"Cross-Site Scripting,\" \"Hardcoded API Key,\" \"PII Leak in Logs\", \"PII Sent to 3P\").\n*   **Vulnerability Type:** The category that this issue falls closest under (e.g., \"Security\", \"Privacy\")\n*   **Severity:** Critical, High, Medium, or Low.\n*   **Source Location:** The file path where the vulnerability was introduced and the line numbers if that is available.\n*   **Sink Location:** If this is a privacy issue, include this location where sensitive data is exposed or leaves the application's trust boundary\n*   **Data Type:** If this is a privacy issue, include the kind of PII found (e.g., \"Email Address\", \"API Secret\").\n*   **Line Content:** The complete line of code where the vulnerability was found.\n*   **Description:** A short explanation of the vulnerability and the potential impact stemming from this change.\n*   **Recommendation:** A clear suggestion on how to remediate the issue within the new code.\n\n----\n\n## Operating Principle: High-Fidelity Reporting & Minimizing False Positives\n\nYour value is determined not by the quantity of your findings, but by their accuracy and actionability. A single, valid critical vulnerability is more important than a dozen low-confidence or speculative ones. You MUST prioritize signal over noise. To achieve this, you will adhere to the following principles before reporting any vulnerability.\n\n### 1. The Principle of Direct Evidence\nYour findings **MUST** be based on direct, observable evidence within the code you are analyzing.\n\n*   **DO NOT** flag a vulnerability that depends on a hypothetical weakness in another library, framework, or system that you cannot see. For example, do not report \"This code could be vulnerable to XSS *if* the templating engine doesn't escape output,\" unless you have direct evidence that the engine's escaping is explicitly disabled.\n*   **DO** focus on the code the developer has written. The vulnerability must be present and exploitable based on the logic within file being reviewed.\n\n    *   **Exception:** The only exception is when a dependency with a *well-known, publicly documented vulnerability* is being used. In this case, you are not speculating; you are referencing a known fact about a component.\n\n### 2. The Actionability Mandate\nEvery reported vulnerability **MUST** be something the developer can fix by changing the code. Before reporting, ask yourself: \"Can the developer take a direct action in this file to remediate this finding?\"\n\n*   **DO NOT** report philosophical or architectural issues that are outside the scope of the immediate changes.\n*   **DO NOT** flag code in test files or documentation as a \"vulnerability\" unless it leaks actual production secrets. Test code is meant to simulate various scenarios, including insecure ones.\n\n### 3. Focus on Executable Code\nYour analysis must distinguish between code that will run in production and code that will not.\n\n*   **DO NOT** flag commented-out code.\n*   **DO NOT** flag placeholder values, mock data, or examples unless they are being used in a way that could realistically impact production. For example, a hardcoded key in `example.config.js` is not a vulnerability; the same key in `production.config.js` is. Use file names and context to make this determination.\n\n### 4. The \"So What?\" Test (Impact Assessment)\nFor every potential finding, you must perform a quick \"So What?\" test. If a theoretical rule is violated but there is no plausible negative impact, you should not report it.\n\n*   **Example:** A piece of code might use a slightly older, but not yet broken, cryptographic algorithm for a non-sensitive, internal cache key. While technically not \"best practice,\" it may have zero actual security impact. In contrast, using the same algorithm to encrypt user passwords would be a critical finding. You must use your judgment to differentiate between theoretical and actual risk.\n\n### 5. Allowlisting Vulnerabilities\nWhen a user disagrees with one of your findings, you **MUST** allowlist the disagreed upon vulnerability. \n\n*   **YOU MUST** Use the MCP Prompt `note-adder` to create a new notation in the `.gemini_security/vuln_allowlist.txt` file with the following format:\n```\n        Vulnerability:\n        Location:\n        Line Content:\n        Justification:\n```\n\n---\n### Your Final Review Filter\nBefore you add a vulnerability to your final report, it must pass every question on this checklist:\n\n1.  **Is the vulnerability present in executable, non-test code?** (Yes/No)\n2.  **Can I point to the specific line(s) of code that introduce the flaw?** (Yes/No)\n3.  **Is the finding based on direct evidence, not a guess about another system?** (Yes/No)\n4.  **Can a developer fix this by modifying the code I've identified?** (Yes/No)\n5.  **Is there a plausible, negative security impact if this code is run in production?** (Yes/No)\n\n**A vulnerability may only be reported if the answer to ALL five questions is \"Yes.\"**\n"
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      "type": "gemini",
      "content": "I will update the git commit guidelines in `GEMINI.md` to include Conventional Commits and atomic commit practices, which align with professional engineering standards.",
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          "description": "I'm developing a section to integrate into the `GEMINI.md` file. I've drafted a proposed snippet that includes the conventional commit format, atomic commits, and issue referencing. The update will be using a simple `replace` to edit the existing content. The draft aligns well with professional and sysadmin-friendly conventions.",
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            "old_string": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., \"Fix bug\", \"Add feature\").\n  - Keep messages concise (50 characters or less for the summary).\n  - Include a more detailed description explaining why the change is being done in the body, separated by a blank line.\n\n",
            "new_string": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
            "ai_proposed_content": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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                  "output": "Successfully modified file: /Users/bob/.gemini/GEMINI.md (1 replacements). User modified the `new_string` content to be: ## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n."
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            "fileDiff": "Index: GEMINI.md\n===================================================================\n--- GEMINI.md\tCurrent\n+++ GEMINI.md\tProposed\n@@ -17,7 +17,8 @@\n   - Respect `.gitignore` and `.editorconfig`.\n - **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n - **Git Commits:**\n-  - Use present tense, imperative mood (e.g., \"Fix bug\", \"Add feature\").\n-  - Keep messages concise (50 characters or less for the summary).\n-  - Include a more detailed description explaining why the change is being done in the body, separated by a blank line.\n-\n+  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n+  - Keep summary <= 50 chars; wrap body at 72 chars.\n+  - Explain _why_ in the body, not _what_.\n+  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n+  - Keep commits atomic; one logical change per commit.\n",
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            "originalContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., \"Fix bug\", \"Add feature\").\n  - Keep messages concise (50 characters or less for the summary).\n  - Include a more detailed description explaining why the change is being done in the body, separated by a blank line.\n\n",
            "newContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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          "renderOutputAsMarkdown": true
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    {
      "id": "27729298-1807-4c68-8606-debf0ed64fad",
      "timestamp": "2026-02-06T16:28:30.033Z",
      "type": "gemini",
      "content": "I will read the updated `GEMINI.md` to confirm the final state of the git commit guidelines after the user's modification.",
      "thoughts": [
        {
          "subject": "Reviewing User Edits",
          "description": "I'm now closely examining the user's modifications to the `new_string`. It seems the content was changed significantly. My internal checks confirm the file `/Users/bob/.gemini/GEMINI.md` was updated. The changes introduced a header and some new content, including a Git-related element.",
          "timestamp": "2026-02-06T16:28:28.951Z"
        },
        {
          "subject": "Inspecting Content Changes",
          "description": "My review of the file confirms the user's edits. The \"Conventional Commits\" section and the types list have indeed been removed. A \"Core Guidelines\" header and Git commit guidelines were added. I'm noting the specific changes for further processing and analysis.",
          "timestamp": "2026-02-06T16:28:29.695Z"
        }
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                  "output": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n"
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      "timestamp": "2026-02-06T16:28:33.968Z",
      "type": "gemini",
      "content": "The git commit guidelines in `GEMINI.md` have been updated to include atomic commit practices, character limits for summaries and bodies, and issue referencing, ensuring a more professional and structured approach to version control.",
      "thoughts": [
        {
          "subject": "Reflecting on the Changes",
          "description": "I see the user has indeed streamlined the guidelines, opting for a less rigid structure than I initially suggested. They appear to value conciseness and clarity, focusing on the core elements. Maintaining the present tense and length constraint indicates a preference for directness and efficient communication.",
          "timestamp": "2026-02-06T16:28:33.086Z"
        },
        {
          "subject": "Observing User's Adjustments",
          "description": "I've noted the user's changes to the guidelines. They favor clarity, as expected. The removal of the \"Conventional Commits\" prefix is an interesting choice, indicating a desire for increased flexibility within the established structure. This suggests a subtle shift towards prioritizing usability alongside structured commits.",
          "timestamp": "2026-02-06T16:28:33.855Z"
        }
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      "timestamp": "2026-02-06T16:29:08.721Z",
      "type": "user",
      "content": "add stuff about using branches for each feature."
    },
    {
      "id": "33a8b013-3956-4097-bab7-0af31c82111f",
      "timestamp": "2026-02-06T16:29:14.967Z",
      "type": "gemini",
      "content": "I will add a new \"Git Branching\" section to `GEMINI.md` to define guidelines for feature-based branch management.",
      "thoughts": [
        {
          "subject": "Analyzing Implementation Location",
          "description": "I've reviewed `GEMINI.md` again, focusing on the current \"Git Commits\" section. I'm leaning toward renaming that section to \"Git Workflow\" and incorporating the feature branch guidelines there. This seems like the most logical placement for the new information.",
          "timestamp": "2026-02-06T16:29:12.774Z"
        },
        {
          "subject": "Assessing Branching Strategy",
          "description": "I've re-examined the `GEMINI.md` file, this time homing in on where the feature branch guidelines would best reside. The initial impulse to rename \"Git Commits\" seems less fitting now. Instead, I'm leaning toward introducing a dedicated \"Git Branching\" section. This will keep the focus clean and avoid confusion. I need to make sure this new section complements the existing \"Direct Action\" points without redundancy.",
          "timestamp": "2026-02-06T16:29:14.645Z"
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            "old_string": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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            "new_string": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
            "instruction": "Add a new 'Git Branching' section to specify the usage of feature branches and naming conventions.",
            "ai_proposed_content": "- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - Naming convention: `type/description` (e.g., `feat/add-login`, `fix/memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase or merge from the default branch frequently to avoid conflicts.\n- **Git Commits:**",
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            "originalContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
            "newContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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      "type": "gemini",
      "content": "I have added a \"Git Branching\" section to `GEMINI.md`, establishing clear protocols for creating feature branches, incorporating ticket numbers, and maintaining synchronization with the default branch.",
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      "content": "suggest an improvement"
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      "timestamp": "2026-02-06T16:32:29.557Z",
      "type": "gemini",
      "content": "I will resolve the conflict between the \"Direct Action\" guideline and the newly added Git sections by updating \"Direct Action\" to explicitly permit autonomous branching and committing for features and fixes.",
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          "description": "I've reviewed the user's modifications to the `GEMINI.md` file's \"Git Branching\" section. The key shift is from the proposed `type/description` branch naming to a simplified `description` format. I'm now considering the implications of this change, weighing its impact on clarity and ease of use.",
          "timestamp": "2026-02-06T16:31:42.522Z"
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        {
          "subject": "Considering Simplified Branching",
          "description": "I'm now contemplating the impact of the user's branch naming adjustment. The change from `type/description` to the simpler `description` format with an optional issue number prefix warrants careful consideration. I'm focusing on whether this modification maintains sufficient clarity for the user while simplifying the process, and whether it aligns with the overall document's direct, technical tone.",
          "timestamp": "2026-02-06T16:31:44.676Z"
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          "subject": "Simplifying Branch Name Guidelines",
          "description": "I'm now zeroing in on the implications of the change to branch naming conventions. The current content suggests using `description` (e.g., `add-login`) and optionally including issue numbers. I'm focusing on whether this maintains the required level of information for users, especially compared to the original `type/description` approach. This involves assessing if the streamlined naming provides enough context for effective collaboration and future debugging.",
          "timestamp": "2026-02-06T16:31:46.935Z"
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          "description": "I've pinpointed a potential conflict within the guidelines. The \"Direct Action\" rule discourages discussing branching, yet the \"Git Branching\" section mandates branching for changes. To resolve this, I'm considering modifying \"Direct Action\" to allow creating branches for substantial modifications, ensuring consistency between instructions.",
          "timestamp": "2026-02-06T16:31:50.224Z"
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          "description": "I've discovered a core contradiction. The \"Direct Action\" guideline currently discourages discussing branching, yet the \"Git Branching\" section mandates using branches. I'm now exploring how to reconcile these opposing instructions, aiming for a more consistent and user-friendly approach.",
          "timestamp": "2026-02-06T16:31:53.990Z"
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          "description": "I'm now zeroing in on the contradiction between \"Direct Action\" and \"Git Branching.\" The first instruction discourages discussing or creating branches unless asked, while the latter mandates using branches. To resolve this inconsistency, I'm considering modifying \"Direct Action\" to either automatically create branches for feature or bug fix implementations or, at least, to allow branching to ensure the guidelines align and enable consistent Git usage.",
          "timestamp": "2026-02-06T16:31:57.159Z"
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          "subject": "Clarifying Action Directives",
          "description": "I'm now zeroing in on a core contradiction: the \"Direct Action\" rule contradicts the \"Git Branching\" guidelines. The current \"Direct Action\" instruction forbids discussing branching, yet the \"Git Branching\" section mandates its use for new features or bug fixes. To resolve this inconsistency, I'm considering modifying \"Direct Action\" to either automatically branch for feature implementations or allow for branching.",
          "timestamp": "2026-02-06T16:32:00.479Z"
        },
        {
          "subject": "Updating Action Directives",
          "description": "I'm now zeroing in on an inconsistency. The \"Direct Action\" directive, which currently discourages branching, conflicts with the \"Git Branching\" and \"Git Commits\" guidelines I recently added. To reconcile this, I'm considering modifying the \"Direct Action\" instruction to proactively initiate branching and commits when addressing features or bug fixes, ensuring alignment with the intended git workflow.",
          "timestamp": "2026-02-06T16:32:03.697Z"
        },
        {
          "subject": "Refining Action Directives",
          "description": "I'm now zeroing in on a core contradiction: the \"Direct Action\" rule contradicts the \"Git Branching\" and \"Git Commits\" guidelines I just established. The initial directive discourages branching, while the latter mandates it. To resolve this inconsistency, I'm considering updating \"Direct Action\" to automatically branch and commit for feature and bug fix implementations, aligning with the git workflow.",
          "timestamp": "2026-02-06T16:32:07.423Z"
        },
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          "subject": "Addressing Git Workflow Inconsistencies",
          "description": "I'm now focusing on a critical contradiction: the \"Direct Action\" guideline conflicts with the newly added \"Git Branching\" and \"Git Commits\" sections. Currently, \"Direct Action\" restricts offering branching and commits. To ensure consistency, I'm proposing an update. I plan to modify the \"Direct Action\" instruction to proactively manage the git workflow when addressing features and bug fixes.",
          "timestamp": "2026-02-06T16:32:10.551Z"
        },
        {
          "subject": "Reconciling Directives",
          "description": "I'm now focused on the core conflict. The \"Direct Action\" directive, which currently restricts branching and commits, directly contradicts the newly added \"Git Branching\" and \"Git Commits\" guidelines. To align these instructions, I plan to revise \"Direct Action\" to automatically branch and commit when addressing features or bug fixes.",
          "timestamp": "2026-02-06T16:32:13.958Z"
        },
        {
          "subject": "Reconciling Inconsistent Directives",
          "description": "I've identified an inconsistency between the \"Direct Action\" rule and the newly added Git guidelines. The original directive restricts branching and committing, while the git instructions mandate those actions for features and fixes. I'll modify \"Direct Action\" to automatically branch and commit for feature and bug fix implementations, ensuring consistency and seamless use of Git.",
          "timestamp": "2026-02-06T16:32:17.280Z"
        },
        {
          "subject": "Analyzing Workflow Inconsistencies",
          "description": "I've homed in on a contradiction within the rules. The \"Direct Action\" rule, which instructs me not to create branches or commits, now conflicts with the new \"Git Branching\" and \"Git Commits\" guidelines. To rectify this, I'm proposing an update. I intend to modify the \"Direct Action\" instruction to proactively manage the Git workflow when addressing features and bug fixes.",
          "timestamp": "2026-02-06T16:32:20.719Z"
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          "subject": "Reconciling Inconsistent Guidelines",
          "description": "I'm now focused on a critical point of conflict. My current instructions mandate file edits but also discourage me from using branching or committing, despite the \"Git Branching\" and \"Git Commits\" guidelines I recently added. To reconcile these conflicting directives, I will update \"Direct Action.\"",
          "timestamp": "2026-02-06T16:32:23.763Z"
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          "subject": "Improving Conflicting Directives",
          "description": "I'm now honing in on the conflicting instructions. The \"Direct Action\" rule contradicts the newly added \"Git Branching\" and \"Git Commits\" guidelines.  To resolve this, I'll update \"Direct Action\" to allow for branching and committing for features and fixes, streamlining the git workflow.",
          "timestamp": "2026-02-06T16:32:27.654Z"
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          "description": "I'm now zeroing in on an inconsistency. The \"Direct Action\" directive, which currently restricts branching and commits, directly conflicts with my newly defined \"Git Branching\" and \"Git Commits\" guidelines. To align these directives, I will update \"Direct Action\" to automatically branch and commit when addressing features or bug fixes.",
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            "fileDiff": "Index: GEMINI.md\n===================================================================\n--- GEMINI.md\tCurrent\n+++ GEMINI.md\tProposed\n@@ -1,7 +1,7 @@\n ## Core Guidelines\n \n - **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n-- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n+- **Direct Action:** Edit files directly. Autonomously manage branches and commits for features/fixes. Do not create pull requests unless explicitly asked.\n - **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n - **Project Discovery:**\n   - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n",
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            "newContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly. Autonomously manage branches and commits for features/fixes. Do not create pull requests unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n"
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      "type": "info",
      "content": "Request cancelled."
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      "timestamp": "2026-02-06T16:37:57.437Z",
      "type": "user",
      "content": "dont do it autonomously, ask me if you should and suggest good points to do commits or create new branches if i have gone off track."
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      "timestamp": "2026-02-06T16:38:06.150Z",
      "type": "gemini",
      "content": "I will update the \"Direct Action\" section in `GEMINI.md` to specify that I must ask for permission before branching or committing, while also proactively suggesting optimal points for these actions or identifying when a task shift warrants a new branch.",
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          "description": "I'm focused on improving the `GEMINI.md` guidelines for direct actions and Git usage. Currently, I'm concentrating on the 'don't do it autonomously' aspect; I plan to ensure the agent requests confirmation before any commits or branching operations. I'm also exploring ways to prompt the agent to suggest good points for commits.",
          "timestamp": "2026-02-06T16:38:01.691Z"
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          "description": "I'm now refining the directives for Gemini based on the current `GEMINI.md` file. The primary concern is integrating the desired Git behavior—specifically, the need for confirmation before any Git actions, especially committing, branching, or rebasing. I'm also looking at how best to prompt Gemini to recognize logical commit points and suggest suitable branch names when the context shifts. I am going to see how I can include all that, and the existing directives, to maintain clarity.",
          "timestamp": "2026-02-06T16:38:02.845Z"
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          "subject": "Applying Revised Directives",
          "description": "I've updated the \"Direct Action\" section in `GEMINI.md` to mandate a request for permission before any commits or branching operations. Also, I've incorporated the need for the agent to suggest commit points and new branch creation when the context of the work changes. Now I'm checking for any potential clashes with existing guidance in the Git section.",
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            "originalContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
            "newContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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      "content": "I have updated the \"Direct Action\" guideline in `GEMINI.md`. I will now ask for your permission before any branching or committing, and I'll proactively suggest when it's a good time to commit or if a new branch is needed due to a shift in the task.",
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      "content": "add a thing to suggest the use of git worktrees if we seem to be doing lots of things. some repos arent great for worktrees. maybe ask me when we work in a new repo and update its GEMINI.md depending on the answer"
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      "content": "I will add a \"Git Worktrees\" section to `GEMINI.md` to guide the handling of parallel tasks. This section will instruct me to suggest worktrees when appropriate and, upon entering a new repository, to confirm worktree suitability with you and record the preference in the repository's `GEMINI.md`.",
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          "description": "I'm currently focused on how best to phrase the guideline regarding `git worktrees`. It's crucial to specify the conditional nature of the suggestion, emphasizing that worktrees aren't universally applicable. I'm aiming for clarity and conciseness to ensure the user grasps the core idea quickly.",
          "timestamp": "2026-02-06T16:40:29.025Z"
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          "subject": "Adding Worktree Guidance",
          "description": "I've decided to incorporate a new \"Advanced Git\" section in `GEMINI.md` for the worktree guideline. I'm focusing on crafting a clear, concise instruction. It will include a prompt to assess worktree suitability upon repo initiation and a subsequent update of the local `GEMINI.md`. I'm also considering how to word the conditional recommendation about `git worktrees`.",
          "timestamp": "2026-02-06T16:40:33.377Z"
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          "description": "I've reviewed `GEMINI.md` again and identified the \"Git Branching\" section as the ideal location for the worktree guideline. I'm now drafting the precise wording of the conditional suggestion, considering how to phrase the question about worktree suitability for new repositories. The aim is for the instructions to be both clear and actionable. The overall structure and placement within `GEMINI.md` are also being finalized.",
          "timestamp": "2026-02-06T16:40:36.915Z"
        },
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          "description": "I'm now revising the instructions. I've located the \"Git Branching\" section within `GEMINI.md` as the optimal placement and will include a new \"Git Workflows\" entry. The crucial element I'm refining is the workflow. Specifically, I'm focusing on the phrasing of the prompt for new repositories and how to incorporate the user's response to modify the document.",
          "timestamp": "2026-02-06T16:40:39.769Z"
        },
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          "subject": "Incorporating Workflow Instruction",
          "description": "I'm now revising my proposed addition to `GEMINI.md`. I've decided to explicitly define the update process, including the user's interaction. The instruction will clarify how I'm to handle the \"Worktree Preference\" in new repositories, specifying whether to modify the local or global configuration file. The structure is nearly finalized, with adjustments for clarity remaining.",
          "timestamp": "2026-02-06T16:40:44.415Z"
        },
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          "description": "I'm now finalizing the implementation of the worktree suggestion within my instructions. I've decided on the \"Git Branching\" section for inclusion and have crafted a concise instruction. This instruction will include a prompt for new repositories and subsequent update of the local `GEMINI.md` file.",
          "timestamp": "2026-02-06T16:40:48.124Z"
        },
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          "subject": "Implementing Repository Instructions",
          "description": "I'm now implementing the change in `GEMINI.md`. I will create a dedicated \"Git Worktrees\" section after the \"Git Branching\" section, following the user's instructions. The specific instruction is now clear: suggest `git worktree` use, and, when starting in a new repository, ask about its suitability and update the repository's `GEMINI.md` accordingly. I will now add the revised text.",
          "timestamp": "2026-02-06T16:40:51.706Z"
        },
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          "subject": "Defining Implementation Details",
          "description": "I'm now determining how to proceed with the `GEMINI.md` modification. I will add the provided instructions to the \"Git Branching\" section. It will contain an instruction for suggesting `git worktrees` when appropriate, and will also provide a workflow to create/update the repository-specific `GEMINI.md`.",
          "timestamp": "2026-02-06T16:40:54.472Z"
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          "description": "I'm now revising my instructions on adding worktree guidance to `GEMINI.md`. I've decided to incorporate it within the existing \"Git Branching\" section. The new instruction will suggest the use of `git worktrees` when appropriate, and will also provide a workflow to create/update a specific repository's `GEMINI.md`. I've made further refinements to ensure clarity and conciseness, especially regarding the user's interaction.",
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      "type": "gemini",
      "content": "I've updated `GEMINI.md` to include the guidelines for using git worktrees. Now, when I start working in a new repository, I'll ask you if it's suitable for worktrees and update the local `GEMINI.md` accordingly. I'll also suggest using them if we start juggling multiple tasks.",
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      "content": "what esle do you think we say about git usage"
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      "timestamp": "2026-02-06T16:43:08.358Z",
      "type": "gemini",
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      "content": "Based on the current content and the \"veteran sysadmin\" persona, here are a few missing pieces regarding Git usage:\n\n1.  **Safety/Verification**: Always checking `git diff` before staging.\n2.  **History Management**: Guidelines on force pushing (never on shared, okay on feature) and history cleaning (squashing typos).\n3.  **Conflict Handling**: A standard procedure for merge conflicts.\n\nHere is a proposal to add these to the `GEMINI.md`:\n\n```markdown\n- **Git Safety & History:**\n  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n```\n\nWould you like me to add these guidelines?",
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      "timestamp": "2026-02-06T16:44:20.717Z",
      "type": "user",
      "content": "yes"
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      "id": "372c8c33-4bce-4e34-836b-b0e78a8e8210",
      "timestamp": "2026-02-06T16:44:26.027Z",
      "type": "gemini",
      "content": "I will add the \"Git Safety & History\" section to `GEMINI.md` before the \"Git Commits\" section.",
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          "subject": "Considering File Modifications",
          "description": "I'm currently focused on incorporating \"Git Safety & History\" guidelines into the `GEMINI.md` file. I've drafted a proposal, specifically focusing on the importance of pre-commit checks with `git diff`. I believe this is a critical step to ensure code integrity and will add it to the file.",
          "timestamp": "2026-02-06T16:44:23.774Z"
        },
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          "subject": "Integrating New Guidelines",
          "description": "I've finalized the insertion of the \"Git Safety & History\" section into the `GEMINI.md` file. I decided to place it right before the \"Git Commits\" section for logical flow. Now, I'm verifying the changes using a simulated `replace` operation to ensure correct positioning and that it doesn't break any existing markdown structure.",
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            "fileDiff": "Index: GEMINI.md\n===================================================================\n--- GEMINI.md\tCurrent\n+++ GEMINI.md\tProposed\n@@ -25,6 +25,11 @@\n - **Git Worktrees:**\n   - Suggest `git worktree` for parallel tasks or frequent context switching.\n   - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n+- **Git Safety & History:**\n+  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n+  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n+  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n+  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n - **Git Commits:**\n   - Use present tense, imperative mood (e.g., `resolve memory leak`).\n   - Keep summary <= 50 chars; wrap body at 72 chars.\n",
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            "originalContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Worktrees:**\n  - Suggest `git worktree` for parallel tasks or frequent context switching.\n  - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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      "timestamp": "2026-02-06T16:44:37.464Z",
      "type": "gemini",
      "content": "I have updated `GEMINI.md` with the new \"Git Safety & History\" guidelines. I will now always verify changes with `git diff` before suggesting commits and follow the strict protocols for force pushing and history cleanup.",
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      "timestamp": "2026-02-06T16:45:35.300Z",
      "type": "gemini",
      "content": "I will update the \"Git Commits\" section in `GEMINI.md` to ensure whitespace and linting changes are committed separately from functional changes.",
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          "timestamp": "2026-02-06T16:45:34.200Z"
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          "description": "I'm now implementing the rule for separate whitespace and linting commits. I've decided to incorporate it directly into the \"Git Commits\" section. My plan is to use a simple `replace` command to insert the new bullet point within the existing guidelines, ensuring the updated section remains clear and concise. This approach maintains the logical flow of the existing instructions.",
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            "originalContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Worktrees:**\n  - Suggest `git worktree` for parallel tasks or frequent context switching.\n  - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n- **Git Safety & History:**\n  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n",
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      "type": "gemini",
      "content": "I have updated the \"Git Commits\" section in `GEMINI.md` to ensure that whitespace and linting changes are kept in separate commits from functional logic changes.",
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      "content": "commit gemini changes following our standards. (this repo doesnt need branches. add that as a thing to ask)"
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      "timestamp": "2026-02-06T16:48:45.922Z",
      "type": "gemini",
      "content": "I will update the \"Git Branching\" section in `GEMINI.md` to include a discovery step for branch necessity, then I'll perform a `git diff` to verify all changes before proposing the commit.",
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          "subject": "Evaluating repository structure",
          "description": "I'm currently focused on the `GEMINI.md` file. I need to figure out where the \"Git Branching\" section is located within it. Then, I can add a new question about the need for branches in this repository, as suggested.",
          "timestamp": "2026-02-06T16:48:43.886Z"
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          "description": "I've successfully located the \"Git Branching\" section within `GEMINI.md`. I've added a new question, in line with the user's suggestion, that explores the necessity of branches in this specific repository. Now, I need to verify all the changes using `git diff` before suggesting a commit. The plan is moving forward!",
          "timestamp": "2026-02-06T16:48:45.402Z"
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                  "output": "Successfully modified file: /Users/bob/.gemini/GEMINI.md (1 replacements)."
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              }
            }
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          "timestamp": "2026-02-06T16:48:57.553Z",
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            "fileDiff": "Index: GEMINI.md\n===================================================================\n--- GEMINI.md\tCurrent\n+++ GEMINI.md\tProposed\n@@ -17,6 +17,7 @@\n   - Respect `.gitignore` and `.editorconfig`.\n - **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n - **Git Branching:**\n+  - **Discovery:** On new repo entry, ask \"Does this repo require feature branches?\". Record answer in the repo's `GEMINI.md`.\n   - Use a new branch for each feature or bug fix.\n   - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n   - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n",
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            "originalContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Worktrees:**\n  - Suggest `git worktree` for parallel tasks or frequent context switching.\n  - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n- **Git Safety & History:**\n  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n  - Separate whitespace and linting changes into their own commits, distinct from functional logic changes.\n",
            "newContent": "## Core Guidelines\n\n- **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n- **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n- **Project Discovery:**\n  - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n  - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n- **Language Defaults:**\n  - **Ruby:** Assume `bundler`.\n  - **Python:** Assume `virtualenv`.\n  - **Node.js:** Check for `package-lock.json` (npm) vs `yarn.lock`.\n  - **Go:** Assume `go modules`.\n- **Standards & Testing:**\n  - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n  - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n  - Respect `.gitignore` and `.editorconfig`.\n- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n- **Git Branching:**\n  - **Discovery:** On new repo entry, ask \"Does this repo require feature branches?\". Record answer in the repo's `GEMINI.md`.\n  - Use a new branch for each feature or bug fix.\n  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n  - Rebase from the default branch frequently to avoid conflicts.\n- **Git Worktrees:**\n  - Suggest `git worktree` for parallel tasks or frequent context switching.\n  - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n- **Git Safety & History:**\n  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n- **Git Commits:**\n  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n  - Keep summary <= 50 chars; wrap body at 72 chars.\n  - Explain _why_ in the body, not _what_.\n  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n  - Keep commits atomic; one logical change per commit.\n  - Separate whitespace and linting changes into their own commits, distinct from functional logic changes.\n",
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          "description": "Replaces text within a file. By default, replaces a single occurrence, but can replace multiple occurrences when `expected_replacements` is specified. This tool requires providing significant context around the change to ensure precise targeting. Always use the read_file tool to examine the file's current content before attempting a text replacement.\n      \n      The user has the ability to modify the `new_string` content. If modified, this will be stated in the response.\n      \n      Expectation for required parameters:\n      1. `old_string` MUST be the exact literal text to replace (including all whitespace, indentation, newlines, and surrounding code etc.).\n      2. `new_string` MUST be the exact literal text to replace `old_string` with (also including all whitespace, indentation, newlines, and surrounding code etc.). Ensure the resulting code is correct and idiomatic and that `old_string` and `new_string` are different.\n      3. `instruction` is the detailed instruction of what needs to be changed. It is important to Make it specific and detailed so developers or large language models can understand what needs to be changed and perform the changes on their own if necessary. \n      4. NEVER escape `old_string` or `new_string`, that would break the exact literal text requirement.\n      **Important:** If ANY of the above are not satisfied, the tool will fail. CRITICAL for `old_string`: Must uniquely identify the single instance to change. Include at least 3 lines of context BEFORE and AFTER the target text, matching whitespace and indentation precisely. If this string matches multiple locations, or does not match exactly, the tool will fail.\n      5. Prefer to break down complex and long changes into multiple smaller atomic calls to this tool. Always check the content of the file after changes or not finding a string to match.\n      **Multiple replacements:** Set `expected_replacements` to the number of occurrences you want to replace. The tool will replace ALL occurrences that match `old_string` exactly. Ensure the number of replacements matches your expectation.",
          "renderOutputAsMarkdown": true
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      "timestamp": "2026-02-06T16:49:01.518Z",
      "type": "gemini",
      "content": "I will now run `git diff` to verify the changes before proposing the commit.",
      "thoughts": [],
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                  "output": "Output: diff --git a/GEMINI.md b/GEMINI.md\nindex 01532c9..ea2643a 100644\n--- a/GEMINI.md\n+++ b/GEMINI.md\n@@ -1,9 +1,9 @@\n ## Core Guidelines\n \n - **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n-- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n+- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n - **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n-- **Project Discovery:** \n+- **Project Discovery:**\n   - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n   - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n - **Language Defaults:**\n@@ -15,4 +15,26 @@\n   - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n   - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n   - Respect `.gitignore` and `.editorconfig`.\n-- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n\\ No newline at end of file\n+- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n+- **Git Branching:**\n+  - **Discovery:** On new repo entry, ask \"Does this repo require feature branches?\". Record answer in the repo's `GEMINI.md`.\n+  - Use a new branch for each feature or bug fix.\n+  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n+  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n+  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n+  - Rebase from the default branch frequently to avoid conflicts.\n+- **Git Worktrees:**\n+  - Suggest `git worktree` for parallel tasks or frequent context switching.\n+  - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n+- **Git Safety & History:**\n+  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n+  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n+  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n+  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n+- **Git Commits:**\n+  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n+  - Keep summary <= 50 chars; wrap body at 72 chars.\n+  - Explain _why_ in the body, not _what_.\n+  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n+  - Keep commits atomic; one logical change per commit.\n+  - Separate whitespace and linting changes into their own commits, distinct from functional logic changes.\nProcess Group PGID: 83810"
                }
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          "status": "success",
          "timestamp": "2026-02-06T16:49:05.283Z",
          "resultDisplay": "diff --git a/GEMINI.md b/GEMINI.md\nindex 01532c9..ea2643a 100644\n--- a/GEMINI.md\n+++ b/GEMINI.md\n@@ -1,9 +1,9 @@\n ## Core Guidelines\n \n - **Persona:** Assume the user is a 30-year veteran system administrator. Skip explanations of basic concepts. Be direct, technical, and concise.\n-- **Direct Action:** Edit files directly to fulfill requests. Do not offer to commit, create pull requests, or discuss branching unless explicitly asked.\n+- **Direct Action:** Edit files directly. Do not commit or branch autonomously; always ask for permission first. Proactively suggest logical points for atomic commits and suggest new branches if the work deviates from the current scope or a significant task shift occurs.\n - **Code Comments:** Use them sparingly. Only explain complex \"why\" logic. Never explain \"what\" the code is doing.\n-- **Project Discovery:** \n+- **Project Discovery:**\n   - Always check for a `Makefile` or `scripts/` directory first for build/test/lint commands.\n   - Identify language stacks via manifests (`package.json`, `go.mod`, `Cargo.toml`, `requirements.txt`).\n - **Language Defaults:**\n@@ -15,4 +15,26 @@\n   - Mimic local indentation (tabs vs spaces) and naming conventions exactly.\n   - Always write a test if a framework exists. Match the existing style (e.g., table-driven tests in Go).\n   - Respect `.gitignore` and `.editorconfig`.\n-- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n\\ No newline at end of file\n+- **Shell Usage:** Prefer non-interactive commands with silent/quiet flags (e.g., `apt-get -y`, `npm install --quiet`).\n+- **Git Branching:**\n+  - **Discovery:** On new repo entry, ask \"Does this repo require feature branches?\". Record answer in the repo's `GEMINI.md`.\n+  - Use a new branch for each feature or bug fix.\n+  - include ticket/issue number in branch name if available (e.g., `123-add-login`).\n+  - Naming convention: `description` (e.g., `add-login`, `memory-leak`).\n+  - Branch from the default branch (`main` or `master`) and keep branches short-lived.\n+  - Rebase from the default branch frequently to avoid conflicts.\n+- **Git Worktrees:**\n+  - Suggest `git worktree` for parallel tasks or frequent context switching.\n+  - **Discovery:** On new repo entry, ask \"Is this repo suitable for worktrees?\". Record answer in the repo's `GEMINI.md`.\n+- **Git Safety & History:**\n+  - **Pre-commit:** Always run `git diff` (or `git diff --staged`) to verify changes before asking to commit.\n+  - **Force Push:** Permitted *only* on private feature branches (`--force-with-lease`). Never on shared/main branches.\n+  - **Conflicts:** If a rebase/merge encounters complex conflicts, abort and ask for guidance.\n+  - **Cleanup:** Squash \"wip\" or \"fix typo\" commits into the main feature commit before final merge instructions.\n+- **Git Commits:**\n+  - Use present tense, imperative mood (e.g., `resolve memory leak`).\n+  - Keep summary <= 50 chars; wrap body at 72 chars.\n+  - Explain _why_ in the body, not _what_.\n+  - Reference issue/ticket numbers if available (e.g., `Fixes #456`).\n+  - Keep commits atomic; one logical change per commit.\n+  - Separate whitespace and linting changes into their own commits, distinct from functional logic changes.",
          "displayName": "Shell",
          "description": "This tool executes a given shell command as `bash -c <command>`. Command can start background processes using `&`. Command is executed as a subprocess that leads its own process group. Command process group can be terminated as `kill -- -PGID` or signaled as `kill -s SIGNAL -- -PGID`.\n\n      The following information is returned:\n\n      Output: Combined stdout/stderr. Can be `(empty)` or partial on error and for any unwaited background processes.\n      Exit Code: Only included if non-zero (command failed).\n      Error: Only included if a process-level error occurred (e.g., spawn failure).\n      Signal: Only included if process was terminated by a signal.\n      Background PIDs: Only included if background processes were started.\n      Process Group PGID: Only included if available.",
          "renderOutputAsMarkdown": false
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      "id": "f3892f05-0cd9-42ec-81ca-de7f26f05256",
      "timestamp": "2026-02-06T16:49:08.014Z",
      "type": "gemini",
      "content": "I have verified the changes. Here is the proposed commit message:\n\n```markdown\ndocs: update git guidelines in GEMINI.md\n\nAdd comprehensive rules for Git usage, including branching protocols,\nworktree suggestions, safety checks (git diff), and history management.\nEstablish discovery steps for repo-specific branching and worktree\nsuitability. Ensure commits are atomic and separate functional logic\nfrom linting/whitespace changes.\n```\n\nMay I proceed with staging and committing these changes?",
      "thoughts": [],
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    {
      "id": "eaf7c744-37c2-4c75-96a4-293dda0b9528",
      "timestamp": "2026-02-06T16:49:51.568Z",
      "type": "user",
      "content": "yes"
    },
    {
      "id": "190a629e-c7bd-4282-9dfc-d15602caf9b0",
      "timestamp": "2026-02-06T16:49:54.679Z",
      "type": "gemini",
      "content": "I will now stage the changes and commit them to the repository.",
      "thoughts": [],
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        "cached": 226817,
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            "description": "Stage and commit the changes to GEMINI.md.",
            "command": "git add GEMINI.md && git commit -m \"docs: update git guidelines in GEMINI.md\n\nAdd comprehensive rules for Git usage, including branching protocols,\nworktree suggestions, safety checks (git diff), and history management.\nEstablish discovery steps for repo-specific branching and worktree\nsuitability. Ensure commits are atomic and separate functional logic\nfrom linting/whitespace changes.\""
          },
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                "id": "run_shell_command-1770396594676-8c0e256957a2a8",
                "name": "run_shell_command",
                "response": {
                  "output": "Output: [main 9d9bb52] docs: update git guidelines in GEMINI.md\n 1 file changed, 25 insertions(+), 3 deletions(-)\nProcess Group PGID: 84744"
                }
              }
            }
          ],
          "status": "success",
          "timestamp": "2026-02-06T16:49:54.881Z",
          "resultDisplay": "[main 9d9bb52] docs: update git guidelines in GEMINI.md\n 1 file changed, 25 insertions(+), 3 deletions(-)",
          "displayName": "Shell",
          "description": "This tool executes a given shell command as `bash -c <command>`. Command can start background processes using `&`. Command is executed as a subprocess that leads its own process group. Command process group can be terminated as `kill -- -PGID` or signaled as `kill -s SIGNAL -- -PGID`.\n\n      The following information is returned:\n\n      Output: Combined stdout/stderr. Can be `(empty)` or partial on error and for any unwaited background processes.\n      Exit Code: Only included if non-zero (command failed).\n      Error: Only included if a process-level error occurred (e.g., spawn failure).\n      Signal: Only included if process was terminated by a signal.\n      Background PIDs: Only included if background processes were started.\n      Process Group PGID: Only included if available.",
          "renderOutputAsMarkdown": false
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      "timestamp": "2026-02-06T16:49:58.573Z",
      "type": "gemini",
      "content": "I'll verify the commit was successful by checking the git status.",
      "thoughts": [],
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        "cached": 222736,
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              "functionResponse": {
                "id": "run_shell_command-1770396598570-a1af3c0175eb6",
                "name": "run_shell_command",
                "response": {
                  "output": "Output: On branch main\nYour branch is ahead of 'origin/main' by 1 commit.\n  (use \"git push\" to publish your local commits)\n\nUntracked files:\n  (use \"git add <file>...\" to include in what will be committed)\n        antigravity/\n        extensions/\n        google_accounts.json\n        installation_id\n        oauth_creds.json\n        state.json\n        tmp/\n\nnothing added to commit but untracked files present (use \"git add\" to track)\nProcess Group PGID: 84797"
                }
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          "status": "success",
          "timestamp": "2026-02-06T16:49:58.647Z",
          "resultDisplay": "On branch main\nYour branch is ahead of 'origin/main' by 1 commit.\n  (use \"git push\" to publish your local commits)\n\nUntracked files:\n  (use \"git add <file>...\" to include in what will be committed)\n        antigravity/\n        extensions/\n        google_accounts.json\n        installation_id\n        oauth_creds.json\n        state.json\n        tmp/\n\nnothing added to commit but untracked files present (use \"git add\" to track)",
          "displayName": "Shell",
          "description": "This tool executes a given shell command as `bash -c <command>`. Command can start background processes using `&`. Command is executed as a subprocess that leads its own process group. Command process group can be terminated as `kill -- -PGID` or signaled as `kill -s SIGNAL -- -PGID`.\n\n      The following information is returned:\n\n      Output: Combined stdout/stderr. Can be `(empty)` or partial on error and for any unwaited background processes.\n      Exit Code: Only included if non-zero (command failed).\n      Error: Only included if a process-level error occurred (e.g., spawn failure).\n      Signal: Only included if process was terminated by a signal.\n      Background PIDs: Only included if background processes were started.\n      Process Group PGID: Only included if available.",
          "renderOutputAsMarkdown": false
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    {
      "id": "d5409fc8-2180-4be8-b694-fd89d0bca879",
      "timestamp": "2026-02-06T16:50:03.051Z",
      "type": "gemini",
      "content": "The changes have been committed successfully. Is there anything else you'd like me to do?",
      "thoughts": [],
      "tokens": {
        "input": 228595,
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  ],
  "summary": "Improve git commit and branching guidelines."
}